Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs35364486 chr12:58344448 T/C 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs35378159 chr3:52992992 G/A 0.000184 118 42.9 23.8 25.63 KM Plot
THYM rs35384050 chr3:53008769 G/T 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs35385050 chr3:52997945 C/A 0.000184 118 42.9 23.8 25.63 KM Plot
THYM rs35386167 chr8:50147708 C/A 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs35404013 chr8:50142454 T/G 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs35406359 chr18:33617243 G/GA 0.000136 119 49.4 35 51.23 KM Plot
THYM rs35410084 chr4:98997394 CA/C 9.33E-5 117 37.63 42.9 51.87 KM Plot
THYM rs35443919 chr6:163055804 C/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs35507120 chr3:53053924 C/T 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs35509380 chr6:163053028 A/G 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs35524612 chr21:45512867 G/C 0.000107 119 38.58 50.65 28.43 KM Plot
THYM rs35557779 chr12:759757 C/G 7.09E-5 119 42.33 40.78 25.83 KM Plot
THYM rs35560136 chr16:24788915 T/A 3.17E-6 119 46.6 28 31.37 KM Plot
THYM rs35571496 chr5:72701988 G/GA 0.000168 114 46.27 32.7 22.4 KM Plot